All functions

compute.adjacency.matrix()

Computes the adjacency matrix of a multiplex network

compute.transition.matrix()

Computes the transition matrix of a multiplex and heterogeneous network

create.multiplex()

Create multiplex graphs from individual networks

create.multiplexHet()

Create multiplex heterogeneous graphs from individual networks

create.multiplexHetNetwork.topResults()

Creates a Network with the top results of the Random Walk with restart on a Multiplex and Heterogeneous Network

create.multiplexNetwork.topResults()

Creates a Network with the top results of the Random Walk with restart on a Multiplex Network

Disease_Network

A disease-disease similarity network.

GeneDiseaseRelations

Diseases and their causative genes

isMultiplex()

Is this R object a Multiplex object?

isMultiplexHet()

Is this R object a Multiplex Heterogeneous object?

isRWRMH_Results()

Is this R object a RWR on Multiplex-Heterogeneous object (Results of the RWR-MH)?

isRWRM_Results()

Is this R object a RWR on Multiplex object (Results of the RWR-M)?

normalize.multiplex.adjacency()

Computes column normalization of an adjacency matrix

Pathway_Network

A pathway network (Pathway network)

PPI_Network

A protein-protein physical interaction network (PPI network)

Random.Walk.Restart.Multiplex()

Performs Random Walk with Restart on a Multiplex Network

Random.Walk.Restart.MultiplexHet()

Performs Random Walk with Restart on a Multiplex and Heterogeneous Network