NEWS.md
Removed the archived dnet dependency. Top-result network construction now uses an internal igraph implementation with equivalent behavior for the subset of dNetInduce functionality used by the package.
Fixed inconsistent multiplex node-count field access in heterogeneous network construction and multiplex random-walk validation.
Improved validation of transition and restart parameters.
Fixed custom layer weights (tau, tau1, and tau2) to use the same sum-to-one convention as their defaults, and fixed validation of seed nodes from the second multiplex network.
Updated deprecated igraph calls used by package code for compatibility with current igraph releases.
Minor update to fix some problems with the create.multiplexHetNetwork.topResults function when using weights in the bipartite network.
Major update with the following main points:
Added the possiblity to perform Random Walk with restart on full multiplex heterogeneous networks (Both networks connected by bipartite interactions can now be multiplex).
RandomWalkRestartMH can now handle weighted networks.
New package website for the sake of clarity.
Minor changes in the way to create multiplex objects (A list of graphs is now required.)
Replaced the references to bioRxiv by the final publication in Bioinformatics.